Basic Information
Locus ID:
gene-QOZ80_3AG0233570
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 36940288 | 36942265 | + | gene-QOZ80_3AG0233570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 29,810.85 Da | 51.40 | 57.74 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 147 | 190 | 1.7E-6 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 195 | 253 | 3.6E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 12 | 93 | 1.8E-17 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 8 | 82 | 1.44E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 191 | 2.54E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 84 | 140 | 1.22E-17 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 210 | 1.2E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 219 | 261 | 1.1E-19 | - |
| SMART | SM00184 | ring_2 | 148 | 190 | 2.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 190 | 11.677863 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 83 | 147 | 32.364605 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 5 | 81 | 23.782652 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_002468512.1 | E3 ubiquitin-protein ligase MIEL1 isoform X1 [Sorghum bicolor] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D9VPH8 | CHY-type domain-containing protein OS=Leersia perrieri OX=77586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology