Basic Information
Locus ID:
gene-QOZ80_3AG0231690
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 35770271 | 35773973 | + | gene-QOZ80_3AG0231690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 55,914.75 Da | 42.71 | 67.82 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 250 | 307 | 1.0E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 460 | 496 | 6.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 366 | 5.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 371 | 411 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 204 | 497 | 2.56E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 193 | 501 | 1.5E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 286 | 323 | 0.038 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 496 | 1.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 366 | 2.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 369 | 411 | 4.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 413 | 454 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 240 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 283 | 0.089 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 334 | 366 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 334 | 366 | 13.282162 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 464 | 497 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 464 | 497 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 292 | 9.03805 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 483 | 497 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 66 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_025793598.1 | protein FIZZY-RELATED 2-like [Panicum hallii] | 0 |
| Q8L3Z8 | Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=FZR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WMT1 | ANAPC4_WD40 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08215 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology