Basic Information
Locus ID:
gene-QOZ80_3AG0230570
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 34997232 | 35000583 | + | gene-QOZ80_3AG0230570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 45,358.60 Da | 40.72 | 72.80 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 200 | 231 | 1.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 239 | 276 | 0.0063 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 154 | 413 | 1.03E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 134 | 333 | 6.5E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 348 | 414 | 6.9E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 235 | 276 | 9.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 414 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 150 | 189 | 0.19 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 231 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 382 | 414 | 10.258324 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 382 | 414 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 231 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 285 | 8.570195 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_012698060.1 | transcriptional corepressor LEUNIG-like isoform X1 [Setaria italica] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WL79 | LisH domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08321 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH01.5029 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0230570, gene-QOZ80_3BG0297310 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G512100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G000290, Chr07G000300 |