Basic Information
Locus ID:
gene-QOZ80_3AG0230430
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 34942381 | 34945549 | + | gene-QOZ80_3AG0230430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 77,432.48 Da | 65.13 | 63.96 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 624 | 664 | 1.0897E-18 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 622 | 669 | 2.5E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 624 | 670 | 2.27E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 604 | 675 | 1.8E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 625 | 664 | 10.600894 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 438 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 435 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034574394.1 | uncharacterized protein LOC117838461 [Setaria viridis] | 0 |
| TrEMBL | A0A0A9DTT5 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology