Basic Information
Locus ID:
gene-QOZ80_3AG0225840
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 17356702 | 17365667 | - | gene-QOZ80_3AG0225840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 58,948.07 Da | 52.09 | 74.61 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 162 | 214 | 2.97953E-27 | - |
| Pfam | PF00412 | LIM domain | 162 | 216 | 5.6E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 311 | 521 | 1.4E-99 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 188 | 245 | 3.5E-9 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 156 | 187 | 3.06E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 155 | 236 | 2.3E-16 | - |
| SMART | SM00726 | uim | 41 | 60 | 45.0 | IPR003903 |
| SMART | SM00726 | uim | 91 | 110 | 0.0058 | IPR003903 |
| SMART | SM00132 | lim_4 | 161 | 213 | 1.7E-13 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 91 | 110 | 10.611761 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 160 | 220 | 12.3751 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 162 | 196 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 73 | - | - |
| Coils | Coil | Coil | 83 | 103 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_039783341.1 | protein DA1-related 1-like isoform X3 [Panicum virgatum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A1B6QJ84 | LIM zinc-binding domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G162500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology