Basic Information
Locus ID:
gene-QOZ80_3AG0224060
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 14229171 | 14235674 | - | gene-QOZ80_3AG0224060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 58,067.88 Da | 54.10 | 64.75 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 152 | 204 | 4.58782E-30 | - |
| Pfam | PF00412 | LIM domain | 152 | 207 | 1.9E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 301 | 509 | 1.5E-102 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 144 | 177 | 2.46E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 179 | 233 | 1.32E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 146 | 226 | 5.6E-15 | - |
| SMART | SM00132 | lim_4 | 151 | 203 | 3.9E-11 | IPR001781 |
| SMART | SM00726 | uim | 46 | 65 | 0.17 | IPR003903 |
| SMART | SM00726 | uim | 77 | 96 | 0.026 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 150 | 210 | 12.1276 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 46 | 65 | 8.934976 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 77 | 96 | 10.218639 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 152 | 186 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 122 | - | - |
| Coils | Coil | Coil | 60 | 80 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_039805873.1 | protein DA1-related 1-like [Panicum virgatum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2T7E269 | LIM zinc-binding domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G316100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology