halophFGD

Basic Information

Locus ID: gene-QOZ80_3AG0223890

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: Ring finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3A	14119162	14119845	-	gene-QOZ80_3AG0223890

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.75	12,531.41 Da	50.63	96.07	0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF17123	RING-like zinc finger	76	104	1.4E-8	IPR001841
SUPERFAMILY	SSF57850	RING/U-box	69	115	9.81E-12	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	54	116	8.8E-13	IPR013083

Best hit

Source	Best Hit ID	Description
TAIR	AT1G76410.1	RING/U-box superfamily protein.
RefSeq	XP_039780523.1	E3 ubiquitin-protein ligase EL5-like [Panicum virgatum]
Swiss-Prot	Q8LC69	RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2
TrEMBL	A0A3L6TJM6	Putative RING zinc finger domain superfamily protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G33860 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	7	AH01.1316, AH01.1317, BH01.1369, BH01.1370, BH01.1371 ... CH01.1413, CH01.1414
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_3AG0223860, gene-QOZ80_3AG0223890 ... gene-QOZ80_3BG0268840, gene-QOZ80_3BG0268870, gene-QOZ80_3BG0268880
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0507880.1.CDS1 ... HORVU.MOREX.r3.5HG0507890.1.CDS1
Poaceae	Lolium multiflorum	12	gene-QYE76_063340, gene-QYE76_063341, gene-QYE76_063342 ... gene-QYE76_063343, gene-QYE76_063344, gene-QYE76_063348, gene-QYE76_063350, gene-QYE76_063351, gene-QYE76_063356, gene-QYE76_063357, gene-QYE76_063358, gene-QYE76_063402
Poaceae	Oryza sativa	2	LOC_Os03g44636.1, LOC_Os03g44642.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G142000
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0200097
Poaceae	Sporobolus alterniflorus	2	Chr01G009170, Chr04G025050
Poaceae	Thinopyrum elongatum	3	Tel5E01G592800, Tel5E01G592900, Tel5E01G593100
Poaceae	Triticum aestivum	7	TraesCS5A02G372500.1.cds1, TraesCS5A02G372600.1.cds1 ... TraesCS5B02G374600.1.cds1, TraesCS5B02G374700.1.cds1, TraesCS5D02G382000.1.cds1, TraesCS5D02G382100.1.cds1, TraesCS5D02G382200.1.cds1
Poaceae	Zea mays	2	Zm00001eb050250_P001, Zm00001eb050260_P001
Poaceae	Zoysia macrostachya	2	Zma_g3168, Zma_g850