Basic Information
Locus ID:
gene-QOZ80_3AG0223040
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 12843826 | 12848428 | + | gene-QOZ80_3AG0223040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 71,903.26 Da | 54.97 | 57.87 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 247 | 288 | 4.93204E-14 | - |
| Pfam | PF13696 | Zinc knuckle | 157 | 175 | 8.3E-8 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 3 | 66 | 6.1E-14 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 183 | 203 | 6.9E-7 | IPR025829 |
| SUPERFAMILY | SSF57850 | RING/U-box | 236 | 311 | 6.36E-12 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 155 | 203 | 3.45E-8 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 182 | 224 | 1.7E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 69 | 5.6E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 230 | 327 | 1.6E-13 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 153 | 181 | 2.8E-5 | - |
| SMART | SM00343 | c2hcfinal6 | 187 | 203 | 0.065 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 161 | 177 | 0.05 | IPR001878 |
| SMART | SM01180 | DWNN_2 | 1 | 67 | 2.8E-19 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 188 | 202 | 8.746164 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 1 | 67 | 12.852776 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 614 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 624 | 661 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 454 | - | - |
| Coils | Coil | Coil | 398 | 418 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_025791506.1 | E3 ubiquitin ligase PQT3-like [Panicum hallii] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WBV3 | E3 ubiquitin ligase PQT3-like OS=Eragrostis curvula OX=38414 GN=EJB05_05332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology