Basic Information
Locus ID:
gene-QOZ80_3AG0219350
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 8697621 | 8701517 | - | gene-QOZ80_3AG0219350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 55,516.21 Da | 56.80 | 62.20 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 295 | 322 | 6.5E-7 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 335 | 361 | 1.5E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 332 | 362 | 1.1E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 289 | 323 | 2.04E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 363 | 396 | 6.2E-7 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 328 | 362 | 2.0E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 286 | 324 | 4.8E-13 | - |
| SMART | SM00547 | zf_4 | 368 | 392 | 2.8E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 296 | 320 | 4.3E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 335 | 359 | 1.9E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 366 | 395 | 8.817719 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 294 | 323 | 9.551712 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 333 | 362 | 10.082446 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 337 | 356 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 370 | 389 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 298 | 317 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 482 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_040378128.1 | zinc finger protein VAR3, chloroplastic-like [Oryza brachyantha] | 0 |
| TrEMBL | A0A5J9WC36 | Zinc finger protein VAR3, chloroplastic OS=Eragrostis curvula OX=38414 GN=EJB05_04931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology