Basic Information
Locus ID:
gene-QOZ80_3AG0207350
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 63147 | 71380 | - | gene-QOZ80_3AG0207350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 72,305.99 Da | 41.50 | 64.39 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 378 | 659 | 7.34251E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 417 | 448 | 3.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 540 | 576 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 627 | 659 | 0.013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 379 | 406 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 456 | 491 | 0.014 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 6.0E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 375 | 659 | 1.28E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 337 | 502 | 1.3E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 503 | 659 | 9.1E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 579 | 618 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 534 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 620 | 659 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 409 | 448 | 9.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 576 | 3.2E-5 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 8.9E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 367 | 406 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 492 | 1.2E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 374 | 415 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 416 | 448 | 11.444681 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.527165 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 416 | 448 | 13.816853 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 627 | 659 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 459 | 501 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 627 | 659 | 12.130133 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 285 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_025794282.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Panicum hallii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W8K7 | LisH domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_03701 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology