Basic Information
Locus ID:
gene-QOZ80_2BG0206680
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
positive regulation of viral entry into host cell
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 70709630 | 70710073 | + | gene-QOZ80_2BG0206680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 16,299.96 Da | 70.81 | 85.65 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 19 | 64 | 5.4E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 77 | 8.32E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 83 | 3.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 20 | 63 | 4.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 20 | 64 | 13.020386 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 37 | 46 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039787390.1 | E3 ubiquitin-protein ligase CBL-C-like [Panicum virgatum] | 0 |
| Q12161 | RING finger protein PSH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PSH1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UWV0 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19111 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18579 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19654 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000792 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114180 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31041, Sbi_jg58242 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25846 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004700 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54772, Sgl60074 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004283, gene:ENSEOMG00000023203 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0020160, CQ.Regalona.r1.5BG0021510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144410 |
| Apiaceae | Apium graveolens | 2 | Ag4G00380, Ag5G00594 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G002540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705242 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1354.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri2G11864, Ftri9G29455 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G18660.4 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007493m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g16630.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g028140.2N, BniB04g033240.2N, BniB06p000230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1849 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2017 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g09810 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0118s00011.v1.0, Dusal.1511s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g19700 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.622 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041554 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01814 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3249, BH01.3633, CH01.3819 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0206680, gene-QOZ80_3AG0228920 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0374770.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_066228, gene-QYE76_066250 |
| Poaceae | Oryza coarctata | 2 | Oco05G016780, Oco06G017590 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G318400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G013710, Chr07G013100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G246300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG024660, gene_TRIDC4BG028770 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G162000.1, TraesCS4B02G151200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb020460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47236 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3484 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.17, evm.TU.LG04.3211, evm.TU.LG09.1283 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g17510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.602 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28760 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11267 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1749 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.384 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000745 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14519 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1575 |
| Salicaceae | Populus euphratica | 1 | populus_peu29895 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632913 |
| Solanaceae | Solanum chilense | 1 | SOLCI000962400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013629 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10991 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2360 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23890.v3.1 |