Basic Information
Locus ID:
gene-QOZ80_2BG0206510
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 70628450 | 70633744 | + | gene-QOZ80_2BG0206510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 85,759.62 Da | 66.99 | 64.29 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 703 | 743 | 9.13672E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 701 | 748 | 1.8E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 703 | 749 | 7.85E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 690 | 754 | 7.7E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 704 | 743 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 149 | 198 | - | - |
| Coils | Coil | Coil | 76 | 96 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039783517.1 | uncharacterized protein LOC120650437 isoform X1 [Panicum virgatum] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UWH3 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_19136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology