Basic Information
Locus ID:
gene-QOZ80_2BG0204180
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Phloem protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 69395042 | 69404325 | - | gene-QOZ80_2BG0204180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 75,466.10 Da | 51.74 | 90.47 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14299 | Phloem protein 2 | 392 | 536 | 8.4E-42 | IPR025886 |
| Pfam | PF14299 | Phloem protein 2 | 111 | 290 | 5.1E-36 | IPR025886 |
| Pfam | PF14299 | Phloem protein 2 | 648 | 681 | 2.4E-9 | IPR025886 |
| Pfam | PF00646 | F-box domain | 556 | 597 | 6.0E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 80 | 4.58E-7 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 304 | 398 | 1.8E-8 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 555 | 654 | 3.66E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 555 | 597 | 1.5E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 303 | 340 | 1.4E-5 | - |
| SMART | SM00256 | fbox_2 | 303 | 342 | 15.0 | IPR001810 |
| SMART | SM00256 | fbox_2 | 559 | 599 | 0.0076 | IPR001810 |
| SMART | SM00256 | fbox_2 | 12 | 54 | 50.0 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 553 | 599 | 9.391492 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 543 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02360.1 | phloem protein 2-B10. | 0 |
| RefSeq | XP_025826055.1 | F-box protein PP2-B1-like isoform X1 [Panicum hallii] | 0 |
| Q9ZVQ6 | F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0GEQ4 | F-box domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH07.3782 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0149390, gene-QOZ80_2AG0150010 ... |