halophFGD

Basic Information

Locus ID: gene-QOZ80_2BG0203460

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: Belongs to the helicase family. RecQ subfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2B	68949030	68950920	-	gene-QOZ80_2BG0203460

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.13	42,630.36 Da	61.54	59.79	-0.77

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF16124	RecQ zinc-binding	16	68	7.7E-10	IPR032284
Gene3D	G3DSA:1.10.10.10	-	6	89	1.1E-10	IPR036388
MobiDBLite	mobidb-lite	consensus disorder prediction	291	322	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	347	377	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	266	384	-	-

KEGG Pathway

KO Term:

K10901 (bloom syndrome protein [EC:5.6.2.4])

Pathway:

ko03440 (Homologous recombination) map03440 (Homologous recombination) ko03460 (Fanconi anemia pathway) map03460 (Fanconi anemia pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G35740.2	DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase.
RefSeq	XP_025805608.1	ATP-dependent DNA helicase Q-like 3 isoform X2 [Panicum hallii]
Swiss-Prot	Q9FT72	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1
TrEMBL	A0A5J9V0B0	ATP-dependent DNA helicase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_20436 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg28255, jg28388, jg3112, jg32942, jg35691, jg36492, jg36904 ... jg511
Aizoaceae	Mesembryanthemum crystallinum	5	gene_10373, gene_10948, gene_21402, gene_2204, gene_5986
Amaranthaceae	Atriplex hortensis	6	Ah004683, Ah005652, Ah007645, Ah007650, Ah015102, Ah026211
Amaranthaceae	Beta vulgaris	4	BVRB_4g076650, BVRB_4g085250, BVRB_5g108290, BVRB_9g219470
Amaranthaceae	Salicornia bigelovii	17	Sbi_jg11581, Sbi_jg11582, Sbi_jg11583, Sbi_jg11584 ... Sbi_jg17232, Sbi_jg19109, Sbi_jg19110, Sbi_jg24320, Sbi_jg24683, Sbi_jg24684, Sbi_jg37535, Sbi_jg41810, Sbi_jg46522, Sbi_jg61848, Sbi_jg61849, Sbi_jg8151, Sbi_jg8541
Amaranthaceae	Salicornia europaea	5	Seu_jg11870, Seu_jg20055, Seu_jg20834, Seu_jg491, Seu_jg5377
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00001730, GOSA_00005158, GOSA_00005159, GOSA_00015416 ... GOSA_00022721
Amaranthaceae	Suaeda glauca	15	Sgl21220, Sgl21221, Sgl24395, Sgl26558, Sgl26559, Sgl26564 ... Sgl26565, Sgl26566, Sgl29570, Sgl42783, Sgl47537, Sgl52510, Sgl56386, Sgl57760, Sgl61917
Amaranthaceae	Chenopodium album	15	gene:ENSEOMG00000007815, gene:ENSEOMG00000009554 ... gene:ENSEOMG00000011352, gene:ENSEOMG00000012114, gene:ENSEOMG00000015846, gene:ENSEOMG00000022572, gene:ENSEOMG00000023795, gene:ENSEOMG00000024703, gene:ENSEOMG00000027272, gene:ENSEOMG00000035632, gene:ENSEOMG00000038441, gene:ENSEOMG00000042429, gene:ENSEOMG00000043166, gene:ENSEOMG00000044456, gene:ENSEOMG00000052042
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.4AG0007300, CQ.Regalona.r1.4BG0007530 ... CQ.Regalona.r1.4BG0018000, CQ.Regalona.r1.5AG0000910, CQ.Regalona.r1.5BG0010520, CQ.Regalona.r1.7BG0009780, CQ.Regalona.r1.8AG0016250, CQ.Regalona.r1.8BG0017330, CQ.Regalona.r1.9AG0014850
Anacardiaceae	Pistacia vera	9	pistato.v30020930, pistato.v30082040, pistato.v30082220 ... pistato.v30082310, pistato.v30082330, pistato.v30101500, pistato.v30101510, pistato.v30131840, pistato.v30211750
Apiaceae	Apium graveolens	6	Ag6G01868, Ag6G02028, Ag7G00134, Ag7G00136, Ag7G00222 ... Ag8G00366
Arecaceae	Cocos nucifera	5	COCNU_01G001480, COCNU_03G004660, COCNU_07G015560 ... COCNU_15G002740, scaffold023055G000040
Arecaceae	Phoenix dactylifera	6	gene-LOC103697005, gene-LOC103701408, gene-LOC103702179 ... gene-LOC103709371, gene-LOC103716081, gene-LOC120108368
Asparagaceae	Asparagus officinalis	8	AsparagusV1_02.2169.V1.1, AsparagusV1_04.1057.V1.1 ... AsparagusV1_05.2249.V1.1, AsparagusV1_07.771.V1.1, AsparagusV1_08.2684.V1.1, AsparagusV1_08.2685.V1.1, AsparagusV1_08.2792.V1.1, AsparagusV1_09.722.V1.1
Asteraceae	Flaveria trinervia	6	Ftri12G31397, Ftri14G02097, Ftri14G26220, Ftri15G18536 ... Ftri3G15988, Ftri4G04924
Brassicaceae	Arabidopsis thaliana	5	AT1G10930.1, AT1G31360.1, AT1G60930.1, AT3G05740.1 ... AT4G35740.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10006602m.g.v1.0, Thhalv10006954m.g.v1.0 ... Thhalv10020334m.g.v1.0, Thhalv10023226m.g.v1.0, Thhalv10024545m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g09640.v2.2, Sp1g27200.v2.2, Sp2g03660.v2.2 ... Sp3g04620.v2.2, Sp7g33500.v2.2
Brassicaceae	Brassica nigra	6	BniB01g057930.2N, BniB02g005920.2N, BniB03g004180.2N ... BniB03g013340.2N, BniB04g020590.2N, BniB07g019200.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq03G0024, Ceq06G1127, Ceq09G0389, Ceq09G0399
Casuarinaceae	Casuarina glauca	5	Cgl03G0030, Cgl06G0692, Cgl06G0793, Cgl06G1174, Cgl09G0429
Cymodoceaceae	Cymodocea nodosa	6	gene.Cymno04g13480, gene.Cymno05g13160, gene.Cymno07g01730 ... gene.Cymno08g03930, gene.Cymno09g01390, gene.Cymno18g04950
Dunaliellaceae	Dunaliella salina	7	Dusal.0020s00027.v1.0, Dusal.0020s00028.v1.0 ... Dusal.0020s00029.v1.0, Dusal.0117s00007.v1.0, Dusal.0209s00011.v1.0, Dusal.0312s00009.v1.0, Dusal.0312s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g30250, gene.Thate02g06120, gene.Thate06g06100 ... gene.Thate06g09850, gene.Thate09g19510
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8263
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.509, evm.TU.LG02.2837, evm.TU.LG03.2526 ... evm.TU.LG05.926, evm.TU.LG08.757
Plantaginaceae	Plantago ovata	5	Pov_00001994, Pov_00003378, Pov_00003709, Pov_00036705 ... Pov_00039241
Plumbaginaceae	Limonium bicolor	7	Lb1G08105, Lb1G08107, Lb2G14222, Lb5G26915, Lb5G29560 ... Lb5G29606, Lb8G35696
Poaceae	Echinochloa crus-galli	13	AH03.4079, AH04.2158, AH07.331, AH07.3692, BH03.1658 ... BH04.2336, BH04.2341, BH07.3505, BH07.433, CH03.1812, CH03.4491, CH04.2578, CH07.3580
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0101190, gene-QOZ80_2AG0148060 ... gene-QOZ80_2BG0154570, gene-QOZ80_2BG0203460, gene-QOZ80_2BG0203470, gene-QOZ80_7BG0613160, gene-QOZ80_9AG0671310, gene-QOZ80_9AG0692270, gene-QOZ80_9BG0694780, gene-QOZ80_9BG0718310
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0111650.1, HORVU.MOREX.r3.2HG0169030.1 ... HORVU.MOREX.r3.4HG0354110.1, HORVU.MOREX.r3.4HG0362480.1, HORVU.MOREX.r3.6HG0620770.1
Poaceae	Lolium multiflorum	6	gene-QYE76_016504, gene-QYE76_025762, gene-QYE76_025763 ... gene-QYE76_044072, gene-QYE76_065337, gene-QYE76_065610
Poaceae	Oryza coarctata	9	Oco03G023420, Oco04G024000, Oco07G006170, Oco08G006110 ... Oco13G016010, Oco14G016830, Oco21G009650, Oco22G010950, Oco22G011660
Poaceae	Paspalum vaginatum	6	gene-BS78_01G266600, gene-BS78_02G392600, gene-BS78_K262600 ... gene-BS78_04G033600, gene-BS78_04G296900, gene-BS78_05G256200
Poaceae	Puccinellia tenuiflora	10	Pt_Chr0103464, Pt_Chr0103556, Pt_Chr0203032, Pt_Chr0206934 ... Pt_Chr0302632, Pt_Chr0302666, Pt_Chr0305440, Pt_Chr0305467, Pt_Chr0604974, Pt_Chr0604976
Poaceae	Sporobolus alterniflorus	12	Chr07G013990, Chr0G002400, Chr0G003660, Chr0G012030 ... Chr0G029140, Chr0G032350, Chr23G019700, Chr24G012260, Chr26G000220, Chr26G000230, Chr26G000240, Chr31G008460
Poaceae	Thinopyrum elongatum	5	Tel2E01G226200, Tel2E01G537900, Tel4E01G215000 ... Tel4E01G228200, Tel6E01G603000
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG012300, gene_TRIDC2AG044270 ... gene_TRIDC2BG015080, gene_TRIDC2BG046980, gene_TRIDC4AG027310, gene_TRIDC4AG028650, gene_TRIDC4BG019850, gene_TRIDC4BG021710, gene_TRIDC6AG050960, gene_TRIDC6BG059650
Poaceae	Triticum aestivum	15	TraesCS2A02G103300.1, TraesCS2A02G304900.1 ... TraesCS2B02G120600.1, TraesCS2B02G321700.1, TraesCS2D02G102800.1, TraesCS2D02G303500.1, TraesCS4A02G170100.1, TraesCS4A02G178600.5, TraesCS4B02G126600.1, TraesCS4B02G138800.1, TraesCS4D02G133500.1, TraesCS4D02G144400.2, TraesCS6A02G339900.1, TraesCS6B02G371000.2, TraesCS6D02G320500.1
Poaceae	Zea mays	7	Zm00001eb026880_P004, Zm00001eb165270_P001 ... Zm00001eb231860_P001, Zm00001eb239640_P001, Zm00001eb257010_P001, Zm00001eb330800_P002, Zm00001eb431670_P001
Poaceae	Zoysia japonica	6	nbis-gene-33262, nbis-gene-33765, nbis-gene-45943 ... nbis-gene-45945, nbis-gene-45999, nbis-gene-8520
Poaceae	Zoysia macrostachya	6	Zma_g12171, Zma_g14558, Zma_g14559, Zma_g19176, Zma_g24573 ... Zma_g7958
Portulacaceae	Portulaca oleracea	12	evm.TU.LG01.469, evm.TU.LG02.2474, evm.TU.LG02.2475 ... evm.TU.LG04.291, evm.TU.LG06.1256, evm.TU.LG08.742, evm.TU.LG10.556, evm.TU.LG11.604, evm.TU.LG17.567, evm.TU.LG22.1186, evm.TU.LG23.694, evm.TU.LG23.695
Posidoniaceae	Posidonia oceanica	6	gene.Posoc01g28100, gene.Posoc01g30810, gene.Posoc05g11510 ... gene.Posoc05g19370, gene.Posoc07g02060, gene.Posoc08g03910
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_14_RagTag.743, evm.TU.Scaffold_1_RagTag.73 ... evm.TU.Scaffold_1_RagTag.787, evm.TU.Scaffold_6_RagTag.2163
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-16970, nbisL1-mrna-17701, nbisL1-mrna-7310 ... nbisL1-mrna-8202
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12996, nbisL1-mrna-13389, nbisL1-mrna-17648 ... nbisL1-mrna-5172
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-11667, nbisL1-mrna-11668, nbisL1-mrna-17086 ... nbisL1-mrna-5159, nbisL1-mrna-5799
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000007l.8, evm.TU.utg000011l.1329 ... evm.TU.utg000012l.50, evm.TU.utg000012l.504
Rhizophoraceae	Kandelia obovata	4	Maker00007012, Maker00011357, Maker00011494, Maker00015978
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-15706, nbisL1-mrna-15707, nbisL1-mrna-15843 ... nbisL1-mrna-7908, nbisL1-mrna-8301
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-2951, nbisL1-mrna-67, nbisL1-mrna-897 ... nbisL1-mrna-9019, nbisL1-mrna-9020
Salicaceae	Populus euphratica	7	populus_peu13308, populus_peu14072, populus_peu17048 ... populus_peu17049, populus_peu33352, populus_peu33356, populus_peu34153
Solanaceae	Lycium barbarum	7	gene-LOC132598421, gene-LOC132598678, gene-LOC132614398 ... gene-LOC132616885, gene-LOC132635550, gene-LOC132635553, gene-LOC132644378
Solanaceae	Solanum chilense	5	SOLCI000829600, SOLCI001635100, SOLCI002212700 ... SOLCI002906700, SOLCI003190000
Solanaceae	Solanum pennellii	5	gene-LOC107012022, gene-LOC107020301, gene-LOC107024232 ... gene-LOC107029016, gene-LOC107031384
Tamaricaceae	Reaumuria soongarica	6	STRG.14383_chr08_-, gene_10751, gene_16133, gene_3038 ... gene_6451, gene_8163
Tamaricaceae	Tamarix chinensis	7	TC01G1360, TC01G1361, TC09G0552, TC10G1035, TC10G1036 ... TC11G2030, TC11G2416
Zosteraceae	Zostera marina	6	Zosma01g27830.v3.1, Zosma01g28950.v3.1, Zosma03g06920.v3.1 ... Zosma05g02290.v3.1, Zosma05g16550.v3.1, Zosma05g22360.v3.1