Basic Information
Locus ID:
gene-QOZ80_2BG0202590
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 68340673 | 68341823 | - | gene-QOZ80_2BG0202590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 35,424.29 Da | 68.81 | 51.63 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 187 | 229 | 1.56864E-25 | - |
| Pfam | PF13639 | Ring finger domain | 187 | 229 | 2.5E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 21 | 54 | 1.6E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 233 | 2.36E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 235 | 1.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 188 | 228 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 188 | 229 | 12.312242 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 263 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034575647.1 | probable E3 ubiquitin-protein ligase RHC1A [Setaria viridis] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7FCM7 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G402300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology