Basic Information
Locus ID:
gene-QOZ80_2BG0200460
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 66900464 | 66901924 | - | gene-QOZ80_2BG0200460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 51,169.22 Da | 50.32 | 94.63 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 52 | 124 | 3.8E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 174 | 446 | 5.4E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 41 | 129 | 5.65E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 130 | 5.5E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 134 | 474 | 1.2E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 55 | 119 | 4.9E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 51 | 126 | 28.122246 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 426 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_039791383.1 | U-box domain-containing protein 21-like [Panicum virgatum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UYX5 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19965 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology