Basic Information
Locus ID:
gene-QOZ80_2BG0194470
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 62928282 | 62929013 | - | gene-QOZ80_2BG0194470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 27,014.68 Da | 67.39 | 67.94 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 39 | 93 | 1.13649E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 41 | 91 | 1.0E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 38 | 104 | 1.3E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 105 | 6.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 41 | 91 | 9.6E-11 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 41 | 92 | 12.356501 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 56 | 65 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 155 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_025820166.1 | E3 ubiquitin-protein ligase RMA2-like [Panicum hallii] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SVL9 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_51466 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology