Basic Information
Locus ID:
gene-QOZ80_2BG0194390
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 62876109 | 62884060 | + | gene-QOZ80_2BG0194390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 103,305.11 Da | 53.85 | 78.61 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 249 | 365 | 1.06362E-19 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 821 | 881 | 7.1E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 255 | 365 | 9.3E-8 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 133 | 391 | 3.3E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 820 | 889 | 5.94E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 695 | 759 | 1.27E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 815 | 890 | 1.1E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 134 | 395 | 6.1E-25 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 695 | 759 | 0.012 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 821 | 885 | 0.0087 | IPR014720 |
| SMART | SM00577 | forpap2 | 213 | 374 | 4.4E-13 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 820 | 886 | 10.241762 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 139 | 390 | 16.817228 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 694 | 760 | 8.615251 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 542 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_002452510.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Sorghum bicolor] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V0Y9 | protein-serine/threonine phosphatase OS=Eragrostis curvula OX=38414 GN=EJB05_20614 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology