Basic Information
Locus ID:
gene-QOZ80_2BG0194380
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 62869421 | 62874073 | + | gene-QOZ80_2BG0194380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 87,704.32 Da | 59.52 | 64.50 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 319 | 351 | 8.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 603 | 641 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 429 | 464 | 9.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 507 | 8.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 314 | 645 | 6.72E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 308 | 675 | 1.7E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 564 | 600 | 8.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 601 | 642 | 0.043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 465 | 1.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 468 | 507 | 4.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 548 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 352 | 2.6E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 474 | 508 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 320 | 353 | 12.077406 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 434 | 468 | 10.205597 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 474 | 508 | 10.179234 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 434 | 474 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 320 | 353 | 14.61889 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 339 | 353 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 339 | 353 | 2.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 452 | 466 | 2.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 494 | 508 | 2.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 260 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025814037.1 | WD repeat-containing protein 44-like [Panicum hallii] | 0 |
| Q6NVE8 | WD repeat-containing protein 44 OS=Mus musculus OX=10090 GN=Wdr44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SVJ9 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_51472 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology