Basic Information
Locus ID:
gene-QOZ80_2BG0191300
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 60678167 | 60682759 | + | gene-QOZ80_2BG0191300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 81,197.69 Da | 37.03 | 86.50 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 41 | 338 | 1.41619E-168 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 355 | 656 | 4.94266E-162 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 360 | 652 | 8.7E-46 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 40 | 338 | 8.11E-33 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 354 | 656 | 2.62E-47 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 40 | 338 | 1.4E-24 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 353 | 657 | 4.3E-49 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 355 | 657 | 37.463772 | IPR030395 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 24 | 6.0 | - |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 41 | 339 | 25.348581 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_039790225.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Panicum virgatum] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5J9V0R4 | glycerophosphodiester phosphodiesterase OS=Eragrostis curvula OX=38414 GN=EJB05_21061 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology