Basic Information
Locus ID:
gene-QOZ80_2BG0187880
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 58509964 | 58511199 | - | gene-QOZ80_2BG0187880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 43,962.06 Da | 44.86 | 77.01 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 314 | 345 | 0.026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 207 | 238 | 0.095 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 67 | 349 | 2.83E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 411 | 2.8E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 200 | 238 | 4.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 197 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 345 | 5.3E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 348 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 207 | 247 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 348 | 8.781968 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 332 | 346 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 147 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_039843239.1 | WD repeat-containing protein LWD1-like [Panicum virgatum] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V3F5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21492 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology