Basic Information
Locus ID:
gene-QOZ80_2BG0185880
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 56580570 | 56603827 | - | gene-QOZ80_2BG0185880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 215,536.77 Da | 41.72 | 92.62 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 834 | 931 | 5.34122E-4 | - |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 140 | 380 | 2.4E-64 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 576 | 797 | 1.1E-31 | IPR031642 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 7.0E-32 | IPR026854 |
| SUPERFAMILY | SSF50729 | PH domain-like | 841 | 943 | 1.14E-5 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 834 | 939 | 5.4E-5 | IPR011993 |
| SMART | SM00233 | PH_update | 794 | 938 | 1.3E-4 | IPR001849 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_034588860.1 | uncharacterized protein LOC117851161 isoform X1 [Setaria viridis] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9V3J0 | C2 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_21700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology