Basic Information
Locus ID:
gene-QOZ80_2BG0182650
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 53419036 | 53424526 | - | gene-QOZ80_2BG0182650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 60,058.97 Da | 45.32 | 92.40 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 228 | 528 | 5.84554E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 491 | 528 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 264 | 5.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 274 | 309 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 486 | 0.0089 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 223 | 528 | 1.39E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 216 | 490 | 7.8E-51 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 491 | 538 | 7.2E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 400 | 440 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 444 | 486 | 0.45 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 309 | 6.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 264 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 369 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 489 | 529 | 1.4E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 318 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 232 | 273 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 496 | 528 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 31 | 63 | 8.805831 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 314 | 11.339228 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 232 | 266 | 10.100143 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 496 | 538 | 12.446495 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_025793452.1 | WD repeat-containing protein WDS homolog [Panicum hallii] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V4L7 | LisH domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_22072 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology