HalophFGD

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Basic Information
Locus ID: gene-QOZ80_2BG0182320
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description: F-box-like
Maps and Mapping Data
Chromosome Start End Strand ID
chr2B 53124178 53125241 + gene-QOZ80_2BG0182320
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.95 33,423.20 Da 46.98 88.55 -0.02
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF08268 F-box associated domain 176 260 6.6E-5 IPR013187
SUPERFAMILY SSF81383 F-box domain 11 60 1.83E-9 IPR036047
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G19160.1 F-box family protein. 0
RefSeq XP_025792056.1 uncharacterized protein LOC112873276 [Panicum hallii] 0
Swiss-Prot Q9LMB0 Putative F-box protein At1g19160 OS=Arabidopsis thaliana OX=3702 GN=At1g19160 PE=4 SV=1 0
TrEMBL A0A4U6SZD6 F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G233100v2 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 4 BH01.3850, BH04.2111, CH01.4111, CH01.4112
Poaceae Eleusine coracana subsp. coracana 7 gene-QOZ80_2BG0182310, gene-QOZ80_2BG0182320 ...
gene-QOZ80_3AG0249770, gene-QOZ80_3AG0250930, gene-QOZ80_3BG0278350, gene-QOZ80_3BG0278690, gene-QOZ80_UnG0726560
Poaceae Lolium multiflorum 6 gene-QYE76_018469, gene-QYE76_067676, gene-QYE76_067677 ...
gene-QYE76_067679, gene-QYE76_067680, gene-QYE76_068506
Poaceae Oryza coarctata 6 Oco05G014270, Oco06G011750, Oco06G012020, Oco06G012030 ...
Oco19G002880, Oco20G003720
Poaceae Oryza sativa 8 LOC_Os03g25190.1, LOC_Os03g25220.1, LOC_Os03g25240.1 ...
LOC_Os03g25250.1, LOC_Os03g25640.1, LOC_Os03g25650.1, LOC_Os03g26310.1, LOC_Os10g25660.1
Poaceae Thinopyrum elongatum 1 Tel4E01G485500
Poaceae Triticum aestivum 3 TraesCS2B02G217900.1.cds1, TraesCS4A02G013900.1.cds1 ...
TraesCS4D02G288900.1.cds1
Poaceae Zoysia japonica 3 nbis-gene-11989, nbis-gene-47249, nbis-gene-49948
Poaceae Zoysia macrostachya 3 Zma_g1101, Zma_g3492, Zma_g3565
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.