Basic Information
Locus ID:
gene-QOZ80_2BG0182270
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 53051936 | 53054925 | - | gene-QOZ80_2BG0182270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 30,056.08 Da | 51.45 | 53.32 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 145 | 188 | 5.4E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 193 | 250 | 6.1E-27 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 10 | 91 | 8.7E-18 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 82 | 139 | 5.1E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 5 | 80 | 4.58E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 191 | 2.94E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 190 | 2.3E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 217 | 258 | 5.4E-19 | - |
| SMART | SM00184 | ring_2 | 146 | 188 | 1.6E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 3 | 79 | 24.3165 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 189 | 11.722122 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 81 | 145 | 34.848026 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_051185104.1 | E3 ubiquitin-protein ligase RZFP34-like [Lolium perenne] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | K4ADV3 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101765663 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology