Basic Information
Locus ID:
gene-QOZ80_2BG0175630
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 31963522 | 31965180 | - | gene-QOZ80_2BG0175630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.65 | 14,068.39 Da | 24.13 | 99.69 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 32 | 126 | 1.2E-26 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 30 | 127 | 5.1E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 20 | 129 | 3.7E-46 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 32 | 126 | 3.5E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 30 | 127 | 1.1E-39 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 87 | 101 | 6.3E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 65 | 80 | 6.3E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 30 | 43 | 6.3E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 28 | 127 | 18.162104 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_015614818.1 | 40S ribosomal protein S20-1 [Oryza sativa Japonica Group] | 0 |
| P35686 | Small ribosomal subunit protein uS10 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1F0G7 | Ribosomal_S10 domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032276 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology