Basic Information
Locus ID:
gene-QOZ80_2BG0173050
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 18748727 | 18758721 | - | gene-QOZ80_2BG0173050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 102,077.03 Da | 42.06 | 78.42 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 449 | 503 | 2.92684E-27 | - |
| CDD | cd04716 | BAH_plantDCM_I | 193 | 320 | 1.12626E-59 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 512 | 871 | 5.8E-32 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 450 | 503 | 1.5E-12 | IPR023780 |
| Pfam | PF01426 | BAH domain | 196 | 318 | 1.8E-12 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 425 | 511 | 4.4E-18 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 352 | 874 | 2.36E-77 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 139 | 304 | 1.4E-54 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 353 | 892 | 3.3E-266 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 666 | 840 | 3.3E-266 | - |
| SMART | SM00298 | chromo_7 | 449 | 506 | 1.2E-12 | IPR000953 |
| SMART | SM00439 | BAH_4 | 194 | 319 | 4.9E-17 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 450 | 504 | 14.530401 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 351 | 881 | 45.392036 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 194 | 319 | 18.011051 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 518 | 530 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 471 | 491 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 607 | 620 | 5.0E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 352 | 368 | 5.0E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 561 | 575 | 5.0E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 151 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_004983483.1 | DNA (cytosine-5)-methyltransferase 3 [Setaria italica] | 0 |
| Q8LPU5 | DNA (cytosine-5)-methyltransferase 3 OS=Zea mays OX=4577 GN=DMT105 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V7C0 | Chromomethylase 3 OS=Eragrostis curvula OX=38414 GN=EJB05_23142 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology