Basic Information
Locus ID:
gene-QOZ80_2BG0169550
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 12821135 | 12823606 | - | gene-QOZ80_2BG0169550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.61 | 54,336.94 Da | 35.03 | 73.11 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13359 | DDE superfamily endonuclease | 88 | 217 | 4.2E-14 | IPR027806 |
| Pfam | PF12776 | Myb/SANT-like DNA-binding domain | 190 | 272 | 3.8E-5 | IPR024752 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 373 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G28950.1 | 0 | |
| RefSeq | XP_040250157.1 | uncharacterized protein LOC120967927 isoform X2 [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A811PJC9 | Myb_DNA-bind_3 domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS28040 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH08.185, BH06.1466, BH06.1764, CH06.1961, CH08.1556 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2BG0169550, gene-QOZ80_4BG0355250 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0693250.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco01G006970, Oco24G009650 |
| Poaceae | Oryza sativa | 6 | LOC_Os01g10770.1, LOC_Os05g27910.1, LOC_Os09g17180.1 ... |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_03G291000, gene-BS78_04G215100 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703412 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G026040, Chr13G014470 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G496800, Tel7E01G887000 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG015840, gene_TRIDC1BG046630 ... |
| Poaceae | Zea mays | 1 | Zm00001eb033680_P001 |