Basic Information
Locus ID:
gene-QOZ80_2BG0168990
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 12383422 | 12384234 | - | gene-QOZ80_2BG0168990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 27,147.36 Da | 68.93 | 73.56 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 165 | 208 | 1.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 165 | 218 | 5.05E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 212 | 9.5E-21 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 162 | 216 | 0.0023 | - |
| SMART | SM00184 | ring_2 | 166 | 207 | 2.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 208 | 12.902362 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 124 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20823.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039785404.1 | RING-H2 finger protein ATL80-like [Panicum virgatum] | 0 |
| Q9LM69 | RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6TPI0 | RING-H2 finger protein ATL80-like OS=Panicum miliaceum OX=4540 GN=C2845_PM01G20090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH01.3412, CH01.3650 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0168990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0054540.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012304 |
| Poaceae | Oryza coarctata | 2 | Oco19G009120, Oco20G008980 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g39450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G300000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G003860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G347200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG030560, gene_TRIDC1BG036050 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G201700.1.cds1, TraesCS1B02G216000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb022240_P001, Zm00001eb393790_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12818, Zma_g15605 |