HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene-QOZ80_2BG0164930
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr2B 9030417 9031613 - gene-QOZ80_2BG0164930
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.43 45,430.36 Da 56.55 102.71 -0.03
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 25 59 1.7E-4 IPR001810
SUPERFAMILY SSF81383 F-box domain 14 77 1.7E-10 IPR036047
Gene3D G3DSA:1.20.1280.50 - 24 60 1.3E-5 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_052144074.1 uncharacterized protein LOC127763420 [Oryza glaberrima] 0
TrEMBL A0A0E0JYQ4 F-box domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 16 AH02.1784, AH07.1452, AH07.1901, AH07.1934, BH07.1147 ...
BH07.1413, BH07.1435, BH07.1908, BH08.1369, CH07.1033, CH07.1126, CH07.1132, CH07.1145, CH07.1151, CH07.927, CH08.1785
Poaceae Eleusine coracana subsp. coracana 27 gene-QOZ80_2AG0110190, gene-QOZ80_2AG0110220 ...
gene-QOZ80_2AG0110280, gene-QOZ80_2AG0110360, gene-QOZ80_2AG0110370, gene-QOZ80_2AG0110390, gene-QOZ80_2AG0110400, gene-QOZ80_2AG0110410, gene-QOZ80_2AG0111460, gene-QOZ80_2AG0111470, gene-QOZ80_2AG0112350, gene-QOZ80_2AG0129810, gene-QOZ80_2BG0163700, gene-QOZ80_2BG0163770, gene-QOZ80_2BG0163790, gene-QOZ80_2BG0163830, gene-QOZ80_2BG0163840, gene-QOZ80_2BG0163850, gene-QOZ80_2BG0163860, gene-QOZ80_2BG0163870, gene-QOZ80_2BG0164930, gene-QOZ80_2BG0164940, gene-QOZ80_2BG0165720, gene-QOZ80_2BG0184810, gene-QOZ80_4AG0320630, gene-QOZ80_6AG0508590, gene-QOZ80_6AG0508610
Poaceae Hordeum vulgare 4 HORVU.MOREX.r3.3HG0314570.1.CDS1 ...
HORVU.MOREX.r3.3HG0314590.1.CDS1, HORVU.MOREX.r3.3HG0314720.1.CDS1, HORVU.MOREX.r3.3HG0314740.1.CDS1
Poaceae Lolium multiflorum 7 gene-QYE76_015261, gene-QYE76_015310, gene-QYE76_017079 ...
gene-QYE76_041523, gene-QYE76_057756, gene-QYE76_057833, gene-QYE76_057908
Poaceae Oryza coarctata 5 Oco03G007930, Oco03G008160, Oco04G008280, Oco04G008290 ...
Oco07G002840
Poaceae Oryza sativa 5 LOC_Os02g18630.1, LOC_Os02g18640.1, LOC_Os02g19200.1 ...
LOC_Os04g24820.1, LOC_Os04g25840.1
Poaceae Puccinellia tenuiflora 2 Pt_Chr0505900, Pt_Chr0600724
Poaceae Sporobolus alterniflorus 5 Chr06G031530, Chr06G031540, Chr0G015730, Chr13G012900 ...
Chr14G001690
Poaceae Thinopyrum elongatum 6 Tel1E01G687800, Tel3E01G732700, Tel3E01G733300 ...
Tel3E01G735300, Tel3E01G735800, Tel3E01G736000
Poaceae Triticum dicoccoides 6 gene_TRIDC3AG065160, gene_TRIDC3AG065250 ...
gene_TRIDC3BG073870, gene_TRIDC3BG074090, gene_TRIDC3BG074110, gene_TRIDC3BG074120
Poaceae Triticum aestivum 21 TraesCS1A02G415600.1, TraesCS3A02G461700.1 ...
TraesCS3A02G461800.1, TraesCS3A02G462700.1, TraesCS3A02G463100.1.cds1, TraesCS3B02G504300.1, TraesCS3B02G504400.1.cds1, TraesCS3B02G504600.1.cds1, TraesCS3B02G505600.1.cds1, TraesCS3B02G505900.1.cds1, TraesCS3B02G506100.1.cds1, TraesCS3B02G506300.1.cds1, TraesCS3D02G455100.1, TraesCS3D02G455200.1.cds1, TraesCS3D02G455400.1.cds1, TraesCS3D02G456200.1, TraesCS3D02G456400.1.cds1, TraesCS3D02G456600.1, TraesCS3D02G456800.1.cds1, TraesCS3D02G457000.1.cds1, TraesCS3D02G457100.1
Poaceae Zea mays 1 Zm00001eb240310_P001
Poaceae Zoysia japonica 4 nbis-gene-16342, nbis-gene-34069, nbis-gene-45207 ...
nbis-gene-57917
Poaceae Zoysia macrostachya 4 Zma_g12618, Zma_g15259, Zma_g15303, Zma_g2662
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.