Basic Information
Locus ID:
gene-QOZ80_2BG0163500
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 8066408 | 8070459 | - | gene-QOZ80_2BG0163500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 38,255.98 Da | 44.85 | 66.24 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 195 | 323 | 3.81062E-70 | - |
| CDD | cd16571 | RING-HC_SIAHs | 79 | 117 | 1.0872E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 123 | 322 | 1.6E-81 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 134 | 326 | 2.81E-50 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 80 | 122 | 1.38E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 133 | 1.8E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 189 | 5.3E-18 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 190 | 322 | 3.1E-39 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 134 | 194 | 14.219643 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 81 | 117 | 9.464913 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_002453731.1 | E3 ubiquitin-protein ligase SINAT5 [Sorghum bicolor] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | C5Y0I4 | RING-type E3 ubiquitin transferase OS=Sorghum bicolor OX=4558 GN=SORBI_3004G130900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology