Basic Information
Locus ID:
gene-QOZ80_2BG0161210
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
UBP15
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 6306306 | 6314272 | - | gene-QOZ80_2BG0161210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 106,724.68 Da | 55.95 | 65.40 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 427 | 732 | 3.06457E-163 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 429 | 731 | 1.9E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 89 | 126 | 1.3E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 83 | 130 | 2.27E-10 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 426 | 734 | 4.91E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 423 | 738 | 2.7E-90 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 80 | 130 | 1.3E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 89 | 126 | 11.766868 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 428 | 734 | 51.290092 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 429 | 444 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 351 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17110.1 | ubiquitin-specific protease 15. Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant. | 0 |
| RefSeq | XP_025810824.1 | ubiquitin carboxyl-terminal hydrolase 15-like [Panicum hallii] | 0 |
| Q0E2F9 | Ubiquitin C-terminal hydrolase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=UBP15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VED7 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Eragrostis curvula OX=38414 GN=EJB05_25030 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology