Basic Information
Locus ID:
gene-QOZ80_2BG0157210
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 3423698 | 3425104 | + | gene-QOZ80_2BG0157210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 30,111.87 Da | 54.37 | 68.68 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 1 | 147 | 1.4E-69 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 1 | 70 | 8.0E-31 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 72 | 145 | 9.8E-35 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 273 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_039835855.1 | ubiquitin fusion degradation protein 1 homolog isoform X3 [Panicum virgatum] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9SVF0 | Ubiquitin fusion degradation protein 1 homolog (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_51584 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology