Basic Information
Locus ID:
gene-QOZ80_2BG0154570
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 1699240 | 1706540 | - | gene-QOZ80_2BG0154570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 117,845.59 Da | 45.60 | 76.89 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 479 | 611 | 1.60087E-71 | - |
| CDD | cd17920 | DEXHc_RecQ | 278 | 478 | 4.75874E-103 | - |
| Pfam | PF16124 | RecQ zinc-binding | 613 | 692 | 1.4E-15 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 498 | 601 | 4.0E-18 | IPR001650 |
| Pfam | PF09382 | RQC domain | 699 | 815 | 1.1E-19 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 848 | 915 | 7.8E-15 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 292 | 458 | 1.2E-19 | IPR011545 |
| SUPERFAMILY | SSF47819 | HRDC-like | 843 | 922 | 2.4E-15 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 265 | 620 | 7.61E-43 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 477 | 742 | 5.91E-59 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 699 | 811 | 5.6E-18 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 479 | 695 | 1.3E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 839 | 925 | 6.5E-21 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 252 | 478 | 3.9E-93 | IPR027417 |
| SMART | SM00490 | helicmild6 | 521 | 602 | 8.2E-29 | IPR001650 |
| SMART | SM00341 | hrdc7 | 843 | 925 | 1.2E-9 | IPR002121 |
| SMART | SM00487 | ultradead3 | 286 | 487 | 7.2E-33 | IPR014001 |
| SMART | SM00956 | RQC_2 | 701 | 813 | 5.9E-16 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 282 | 752 | 3.6E-167 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 298 | 471 | 23.096458 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 511 | 546 | 9.191455 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 496 | 654 | 19.810448 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 843 | 925 | 17.898104 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 410 | 419 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 918 | 980 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_034597887.1 | ATP-dependent DNA helicase Q-like 4A [Setaria viridis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6WJ29 | DNA helicase OS=Setaria viridis OX=4556 GN=SEVIR_1G091300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology