Basic Information
Locus ID:
gene-QOZ80_2BG0154040
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 1349048 | 1351795 | + | gene-QOZ80_2BG0154040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 31,194.35 Da | 43.84 | 97.46 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 85 | 133 | 4.52748E-20 | - |
| Pfam | PF12906 | RING-variant domain | 85 | 132 | 1.9E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 136 | 6.48E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 144 | 2.1E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 84 | 133 | 7.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 77 | 139 | 20.658579 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_004951990.1 | uncharacterized protein LOC101776116 isoform X2 [Setaria italica] | 0 |
| Q8TCQ1 | E3 ubiquitin-protein ligase MARCHF1 OS=Homo sapiens OX=9606 GN=MARCHF1 PE=1 SV=1 | 0 | |
| TrEMBL | K3YUX9 | RING-CH-type domain-containing protein OS=Setaria italica OX=4555 GN=101776116 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology