Basic Information
Locus ID:
gene-QOZ80_2AG0150070
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 60352032 | 60359970 | - | gene-QOZ80_2AG0150070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 87,043.34 Da | 43.65 | 67.52 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 513 | 798 | 4.11676E-65 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 599 | 635 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 682 | 715 | 4.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 560 | 591 | 2.0E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.4E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 765 | 798 | 0.1 | IPR001680 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 360 | 423 | 2.43E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 511 | 798 | 4.58E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 503 | 650 | 2.2E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 651 | 798 | 2.6E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 595 | 635 | 4.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 759 | 798 | 8.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 549 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 718 | 757 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 552 | 591 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 677 | 715 | 4.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 638 | 674 | 11.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 602 | 644 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 559 | 591 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 559 | 591 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 684 | 724 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 766 | 798 | 12.209223 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.035233 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 766 | 798 | 13.11507 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 425 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_034577810.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Setaria viridis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6WH78 | LisH domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G368600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology