Basic Information
Locus ID:
gene-QOZ80_2AG0148060
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 59118228 | 59121662 | - | gene-QOZ80_2AG0148060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 57,651.39 Da | 51.88 | 87.58 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 25 | 226 | 1.13815E-107 | - |
| CDD | cd18794 | SF2_C_RecQ | 227 | 361 | 1.52778E-58 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 246 | 350 | 2.0E-13 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 364 | 436 | 1.4E-10 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 206 | 2.3E-20 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 77 | 373 | 4.83E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 453 | 4.0E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 8 | 226 | 1.8E-89 | IPR027417 |
| SMART | SM00490 | helicmild6 | 270 | 352 | 2.9E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 4.2E-30 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 437 | 1.6E-142 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 23.794359 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 235 | 396 | 16.095818 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_025805602.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Panicum hallii] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3GU57 | ATP-dependent DNA helicase OS=Panicum hallii OX=206008 GN=PAHAL_1G421300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology