Basic Information
Locus ID:
gene-QOZ80_2AG0147020
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 58287397 | 58288395 | + | gene-QOZ80_2AG0147020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 36,421.40 Da | 64.91 | 52.68 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 186 | 228 | 1.77733E-25 | - |
| Pfam | PF14369 | zinc-ribbon | 20 | 53 | 1.7E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 186 | 228 | 3.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 231 | 5.08E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 234 | 5.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 227 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 228 | 12.312242 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 130 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034575647.1 | probable E3 ubiquitin-protein ligase RHC1A [Setaria viridis] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7FCK0 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G402300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology