Basic Information
Locus ID:
gene-QOZ80_2AG0144950
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 56821327 | 56822748 | - | gene-QOZ80_2AG0144950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 49,780.56 Da | 49.55 | 95.77 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 39 | 111 | 5.9E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 228 | 453 | 3.11E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 116 | 4.24E-27 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 144 | 449 | 9.8E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 117 | 1.2E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 42 | 106 | 1.5E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 38 | 113 | 30.652117 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_039791383.1 | U-box domain-containing protein 21-like [Panicum virgatum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UYX5 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19965 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology