Basic Information
Locus ID:
gene-QOZ80_2AG0144830
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 56733202 | 56735144 | - | gene-QOZ80_2AG0144830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 39,645.71 Da | 57.26 | 87.34 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 316 | 360 | 5.91793E-18 | - |
| Pfam | PF13639 | Ring finger domain | 316 | 358 | 7.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 362 | 9.84E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 297 | 365 | 8.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 317 | 357 | 2.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 317 | 358 | 12.725326 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01735.1 | RING-finger protein for embryogenesis. encodes a RING-H2 zinc finger protein essential for seed development. | 0 |
| RefSeq | XP_002452592.1 | E3 ubiquitin protein ligase RIE1 [Sorghum bicolor] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835F5S2 | RING-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_017473 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology