Basic Information
Locus ID:
gene-QOZ80_2AG0140780
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 53880856 | 53884920 | + | gene-QOZ80_2AG0140780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 46,246.01 Da | 30.53 | 72.94 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 299 | 333 | 0.0098 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 138 | 173 | 5.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 294 | 0.026 | IPR001680 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 107 | 128 | 6.3E-5 | IPR000571 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 105 | 128 | 1.02E-5 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 136 | 422 | 6.71E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 278 | 428 | 4.3E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 132 | 277 | 7.2E-19 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 27 | 131 | 9.3E-9 | - |
| SMART | SM00320 | WD40_4 | 338 | 381 | 2.2 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 103 | 129 | 5.2E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 176 | 211 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 173 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 297 | 334 | 2.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 250 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 294 | 0.0043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 384 | 421 | 180.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 53 | 0.19 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 103 | 130 | 15.685056 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 141 | 182 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 297 | 8.623787 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 141 | 173 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 303 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 10.051596 | IPR000571 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 281 | 295 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 321 | 335 | 3.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 160 | 174 | 3.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 281 | 295 | 3.9E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 102 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_002454483.1 | zinc finger CCCH domain-containing protein 17 [Sorghum bicolor] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A835FPK4 | Zinc finger CCCH domain-containing protein 48 OS=Digitaria exilis OX=1010633 GN=HU200_007179 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology