Basic Information
Locus ID:
gene-QOZ80_2AG0140170
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 53403095 | 53408506 | + | gene-QOZ80_2AG0140170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 115,983.64 Da | 48.23 | 81.21 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 48 | 204 | 1.3268E-37 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 949 | 990 | 8.31763E-24 | - |
| Pfam | PF04564 | U-box domain | 945 | 1016 | 1.2E-16 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 693 | 871 | 7.7E-21 | IPR001245 |
| Pfam | PF00582 | Universal stress protein family | 58 | 167 | 3.4E-6 | IPR006016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 940 | 1015 | 1.94E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 654 | 926 | 1.52E-42 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 60 | 167 | 1.99E-6 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 48 | 175 | 5.3E-6 | IPR014729 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 943 | 1018 | 3.6E-27 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 746 | 933 | 2.0E-24 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 644 | 745 | 2.4E-20 | - |
| SMART | SM00504 | Ubox_2 | 948 | 1011 | 2.1E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 944 | 1018 | 33.040455 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 673 | 924 | 19.792559 | IPR000719 |
| Coils | Coil | Coil | 481 | 508 | - | - |
| Coils | Coil | Coil | 545 | 565 | - | - |
| Coils | Coil | Coil | 427 | 454 | - | - |
| Coils | Coil | Coil | 396 | 416 | - | - |
| Coils | Coil | Coil | 28 | 48 | - | - |
| Coils | Coil | Coil | 609 | 636 | - | - |
| Coils | Coil | Coil | 573 | 600 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_014660103.1 | U-box domain-containing protein 33 isoform X1 [Setaria italica] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UY84 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_20354 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2922, BH07.2744, CH07.2816 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0140170, gene-QOZ80_2BG0195840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0602150.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G017570, Oco04G018320 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G223200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205955 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G024000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG037900 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G245400.1, TraesCS6D02G227800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb186880_P001 |