Basic Information
Locus ID:
gene-QOZ80_2AG0138790
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 52505649 | 52506386 | - | gene-QOZ80_2AG0138790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 26,613.18 Da | 63.06 | 70.98 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 48 | 102 | 1.01228E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 50 | 100 | 6.7E-10 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 47 | 117 | 2.5E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 114 | 1.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 50 | 100 | 5.3E-11 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 50 | 101 | 12.622055 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 65 | 74 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 154 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039851870.1 | E3 ubiquitin-protein ligase RMA3-like [Panicum virgatum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SVL9 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_51466 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology