Basic Information
Locus ID:
gene-QOZ80_2AG0137240
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 51233467 | 51234186 | + | gene-QOZ80_2AG0137240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.44 | 25,391.81 Da | 62.04 | 68.62 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 180 | 223 | 4.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 180 | 229 | 6.63E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 229 | 8.2E-17 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 177 | 231 | 0.0039 | - |
| SMART | SM00184 | ring_2 | 181 | 222 | 2.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 181 | 223 | 13.020386 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 93 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_008678791.3 | E3 ubiquitin-protein ligase MPSR1 [Zea mays] | 0 |
| TrEMBL | A0A2T7F8W9 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G297700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.2577, AH07.2578, BH07.2388, CH07.2462 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0137240, gene-QOZ80_2BG0192840 |
| Poaceae | Oryza coarctata | 1 | Oco03G015160 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G008410, Chr13G007740, Chr15G009920 |
| Poaceae | Zea mays | 2 | Zm00001eb246920_P001, Zm00001eb246930_P001 |