Basic Information
Locus ID:
gene-QOZ80_2AG0134800
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 49497743 | 49498783 | - | gene-QOZ80_2AG0134800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 36,810.42 Da | 63.36 | 88.32 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 119 | 162 | 2.51015E-18 | - |
| Pfam | PF13639 | Ring finger domain | 119 | 162 | 4.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 170 | 6.28E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 167 | 1.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 161 | 9.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 162 | 11.854899 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 346 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27420.1 | carbon/nitrogen insensitive 1. Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings. | 0 |
| RefSeq | NP_001149492.2 | RING-H2 finger protein ATL3B precursor [Zea mays] | 0 |
| Q8LGA5 | E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9V237 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21158 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2290, BH06.2109, CH07.2182 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0134800, gene-QOZ80_2BG0190410 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0314400.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022959, gene-QYE76_023123 |
| Poaceae | Oryza coarctata | 1 | Oco04G013130 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g36320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G171100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G009350, Chr09G013690, Chr13G009540, Chr15G010870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G726900, Tel5E01G688100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG064960, gene_TRIDC3BG073300 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G459700.1, TraesCS3B02G499500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb244640_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20683 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13737 |