Basic Information
Locus ID:
gene-QOZ80_2AG0131420
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Nuclear transport factor 2 (NTF2) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 46839298 | 46843195 | - | gene-QOZ80_2AG0131420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 51,017.79 Da | 59.52 | 61.62 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 20 | 141 | 1.34233E-42 | IPR018222 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 315 | 372 | 1.6E-11 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 22 | 140 | 1.3E-29 | IPR002075 |
| SUPERFAMILY | SSF54427 | NTF2-like | 18 | 141 | 4.38E-35 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 295 | 402 | 4.3E-18 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 272 | 408 | 2.3E-16 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 12 | 144 | 1.4E-37 | - |
| SMART | SM00360 | rrm1_1 | 314 | 386 | 2.4E-13 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 22 | 140 | 30.493813 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 313 | 390 | 12.662667 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 220 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | NP_001136675.1 | RNA-binding protein-like protein [Zea mays] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | B4FJT7 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain OS=Zea mays OX=4577 GN=100216804 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology