Basic Information
Locus ID:
gene-QOZ80_2AG0130600
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Vacuolar-sorting-associated 13 protein C-terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 45793557 | 45808285 | - | gene-QOZ80_2AG0130600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.27 | 265,506.22 Da | 50.91 | 86.84 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 772 | 876 | 6.46848E-7 | - |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 381 | 519 | 1.7E-9 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 134 | 297 | 1.5E-13 | IPR009291 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 1961 | 2103 | 4.4E-9 | IPR031645 |
| Pfam | PF00168 | C2 domain | 774 | 878 | 1.9E-5 | IPR000008 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 1398 | 1712 | 7.4E-15 | IPR009543 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 768 | 877 | 4.37E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 756 | 900 | 7.9E-7 | IPR035892 |
| SMART | SM00694 | dysfc | 1107 | 1146 | 0.0058 | IPR006614 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 751 | 890 | 9.328032 | IPR000008 |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.2 | - | 0 |
| RefSeq | XP_004952484.1 | uncharacterized protein LOC101780568 isoform X1 [Setaria italica] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9V3J0 | C2 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_21700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology