Basic Information
Locus ID:
gene-QOZ80_2AG0130580
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 45779639 | 45785508 | + | gene-QOZ80_2AG0130580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.72 | 50,957.49 Da | 55.65 | 62.05 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 50 | 135 | 7.36976E-40 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 256 | 320 | 3.24067E-16 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 256 | 323 | 1.8E-13 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 53 | 135 | 4.5E-19 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 45 | 148 | 6.54E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 247 | 327 | 1.22E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 238 | 330 | 2.0E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 39 | 160 | 2.0E-28 | IPR036431 |
| SMART | SM00398 | hmgende2 | 255 | 324 | 1.9E-16 | IPR009071 |
| SMART | SM00501 | bright_3 | 49 | 140 | 4.5E-28 | IPR001606 |
| SMART | SM01014 | ARID_2 | 45 | 135 | 6.5E-27 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 256 | 323 | 14.140824 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 48 | 139 | 25.551186 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 179 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_039789598.1 | high mobility group B protein 15-like [Panicum virgatum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0X0K7 | High mobility group B protein 15 OS=Panicum virgatum OX=38727 GN=PVAP13_1NG238400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology