Basic Information
Locus ID:
gene-QOZ80_2AG0127660
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 42727937 | 42733821 | + | gene-QOZ80_2AG0127660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 65,219.86 Da | 44.43 | 84.16 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 302 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 421 | 449 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 550 | 582 | 0.0065 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 260 | 582 | 1.03E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 393 | 585 | 2.9E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 147 | 392 | 7.1E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 546 | 584 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 449 | 1.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 452 | 491 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 348 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 6.4E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 552 | 586 | 9.773251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 459 | 492 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 306 | 11.128319 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 552 | 586 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 14.05078 | IPR001680 |
| Coils | Coil | Coil | 158 | 192 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015640726.1 | WD repeat-containing protein 91 homolog [Oryza sativa Japonica Group] | 0 |
| Q55FJ2 | WD repeat-containing protein 91 homolog OS=Dictyostelium discoideum OX=44689 GN=wdr91 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2T8I249 | ANAPC4_WD40 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G223200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2232 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16180 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018759 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15177, Sbi_jg56011 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26488 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019975 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01479, Sgl06644 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002901, gene:ENSEOMG00000030780 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0003970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30202830 |
| Apiaceae | Apium graveolens | 2 | Ag4G02677, Ag4G02678 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716260 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1911.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21309 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1519 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1620 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11759, nbisL1-mrna-11760 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2821 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010481 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24609, Lb4G25164 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1784, BH01.2108, CH01.2194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127660, gene-QOZ80_2BG0183140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011413 |
| Poaceae | Oryza coarctata | 2 | Oco09G005670, Oco10G006310 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g23430.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G207600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502568 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G013030, Chr09G010930, Chr13G014270, Chr13G014300 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G280700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG023060, gene_TRIDC1BG027910 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G152000.5, TraesCS1B02G169400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb221900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19236 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16180 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g02760, gene.Posoc09g08210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.62 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29278 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17811 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2214, nbisL1-mrna-2215 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.35 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2316 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6332 |
| Salicaceae | Populus euphratica | 1 | populus_peu28136 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616635 |
| Solanaceae | Solanum chilense | 1 | SOLCI006434500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007268 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10793 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1520 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13770.v3.1 |