Basic Information
Locus ID:
gene-QOZ80_2AG0125180
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 38986641 | 38987768 | - | gene-QOZ80_2AG0125180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 40,836.95 Da | 48.09 | 69.52 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 321 | 362 | 2.48873E-11 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 321 | 361 | 1.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 366 | 1.01E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 303 | 371 | 4.5E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 321 | 361 | 3.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 362 | 11.81064 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039824240.1 | uncharacterized protein LOC120686137 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9UN11 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_27022 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology